Pumpkin Swirl Muffins Recipe
If you are looking for a treat that perfectly captures the cozy essence of fall in every bite, these Pumpkin Swirl Muffins are just what you need. They combine the warm, comforting spices of cinnamon, nutmeg, and cloves with velvety pumpkin puree and a luscious cream cheese swirl that melts into the muffin as it bakes. Each muffin comes out tender, moist, and beautifully marbled—making them irresistible whether you’re enjoying a quiet morning coffee or sharing with friends at a festive gathering. These Pumpkin Swirl Muffins are truly a little slice of autumn magic that’s easy to make and hard to forget.

Ingredients You’ll Need
Gathering just the right ingredients is the first step to baking perfect Pumpkin Swirl Muffins. Each component plays a crucial role, whether it’s enhancing flavor, adding structure, or delivering that tender, moist texture we all crave. These pantry staples come together to create a harmonious balance of spice, sweetness, and creaminess.
- All-purpose flour: The base of our muffins, providing structure and softness.
- Baking soda: A natural leavening agent to help the muffins rise perfectly.
- Ground cinnamon: Adds warm, sweet spice essential to that classic pumpkin flavor.
- Ground nutmeg: Offers a subtle nutty undertone that deepens the spice profile.
- Ground cloves: Brings a gentle kick with its aromatic intensity.
- Salt: Enhances all the spices and balances sweetness.
- Granulated sugar: Sweetens the muffin batter and the cream cheese swirl.
- Brown sugar (packed): Adds moisture and a hint of caramel richness.
- Vegetable oil: Keeps the muffins tender and moist, with a neutral taste.
- Canned pumpkin puree: The star ingredient that brings beautiful color and natural moisture.
- Large eggs: Provide structure, moisture, and richness.
- Vanilla extract: Rounds out the flavors with a fragrant sweetness.
- Cream cheese: Softened to creamy perfection, it creates the luscious swirl.
- Egg yolk: Gives the cream cheese mixture a silky texture.
How to Make Pumpkin Swirl Muffins
Step 1: Preheat and Prepare
Start by preheating your oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or give it a light grease to prevent sticking. This initial step ensures a hot oven waiting for your batter, which is crucial for a great rise and beautiful texture.
Step 2: Whisk the Dry Ingredients
In a medium mixing bowl, combine the flour, baking soda, cinnamon, nutmeg, cloves, and salt. Whisking these dry ingredients together evenly distributes the spices and leavening agent throughout the flour, setting the foundation for those deliciously spiced muffins.
Step 3: Mix the Wet Ingredients
In a larger bowl, beat the granulated sugar, brown sugar, and vegetable oil until the mixture looks smooth and glossy. Add your pumpkin puree, eggs, and vanilla extract, whisking until the batter is silky and well combined. It’s the sweetness and moisture coming together here that make these Pumpkin Swirl Muffins so tender and flavorful.
Step 4: Combine Wet and Dry Mixtures
Slowly add the dry ingredients to the wet, stirring just until everything comes together. It’s important not to overmix at this stage—overworked batter can lead to dense muffins, and nobody wants that. The batter should be lumpy and soft, ready for the next delicious step.
Step 5: Prepare the Cream Cheese Swirl
In a small bowl, beat the softened cream cheese with sugar, egg yolk, and vanilla extract until creamy and smooth. This swirl is what transforms these muffins from ordinary to extraordinary by adding a tangy, sweet richness that melts into the pumpkin as it bakes.
Step 6: Assemble the Muffins
Fill each muffin cup about halfway with the pumpkin batter. Then, add a generous dollop of the cream cheese mixture on top. Use a toothpick or skewer to gently swirl the cream cheese into the pumpkin batter, creating the signature marbled effect that makes Pumpkin Swirl Muffins so visually appealing and scrumptious.
Step 7: Bake to Perfection
Bake the muffins for 18 to 22 minutes. You’ll know they’re done when a toothpick inserted in the center comes out clean. The aroma of spices filling your kitchen will signal that your Pumpkin Swirl Muffins are nearly ready to enjoy.
Step 8: Cool and Enjoy
Let the muffins cool in the tin for about 5 minutes to set, then transfer them to a wire rack to cool completely. This helps maintain their perfect texture and makes them easy to handle when you’re ready to dig in!
How to Serve Pumpkin Swirl Muffins

Garnishes
A light dusting of powdered sugar adds a delicate sweetness and a pretty finish to your Pumpkin Swirl Muffins. For an extra touch, sprinkle with chopped toasted pecans or drizzle a little maple glaze over the top to bring out the autumn vibes even more.
Side Dishes
These muffins pair wonderfully with a warm cup of chai or cinnamon-spiced coffee to complement their spicy notes. For a balanced breakfast, serve alongside creamy yogurt and fresh fruit, or even a smear of butter for that classic bakery feel.
Creative Ways to Present
Turn your Pumpkin Swirl Muffins into a charming fall dessert by topping them with a dollop of whipped cream and a cinnamon stick. You can also hollow out the centers slightly and fill them with apple butter or a drizzle of caramel sauce for an extra special treat everyone will rave about.
Make Ahead and Storage
Storing Leftovers
You can store leftover Pumpkin Swirl Muffins in an airtight container at room temperature for up to 3 days, keeping them soft and fresh. If your kitchen is warmer, it’s better to refrigerate them to prevent any spoilage—but be sure to bring them to room temperature before serving for best flavor.
Freezing
These muffins freeze beautifully! Wrap each muffin individually in plastic wrap, then place them all in a freezer bag or container. They can be frozen for up to 3 months—just thaw at room temperature when you’re ready for a quick and easy treat that tastes freshly baked.
Reheating
To refresh your Pumpkin Swirl Muffins, warm them in the microwave for about 15 to 20 seconds or pop them in a preheated oven at 350°F (175°C) for 5 to 7 minutes. This revives their tender crumb and creamy swirl, making them taste like you just pulled them out of the oven.
FAQs
Can I use fresh pumpkin instead of canned pumpkin puree?
Fresh pumpkin can be used, but you’ll need to roast and puree it first. Since fresh pumpkin contains more water, make sure to drain any excess moisture to avoid soggy muffins. The flavor will be wonderful, but canned pumpkin puree is definitely more convenient and consistent for this recipe.
Is it possible to make these muffins gluten-free?
Yes! Substitute the all-purpose flour with a gluten-free flour blend that’s designed for baking. Keep in mind that texture may vary slightly, but the spices and cream cheese swirl will still shine through beautifully.
Can I substitute cream cheese in the swirl with something else?
You can try using mascarpone or ricotta cheese as alternatives, which will provide a similar creamy texture. Keep the sugar and egg yolk for sweetness and richness. The flavor might be a little different but will still add a lovely swirl effect.
How do I prevent the muffins from being dry?
Using vegetable oil instead of butter helps keep these Pumpkin Swirl Muffins moist and tender. Also, be careful not to overmix the batter and watch the baking time closely—overbaking can quickly dry them out.
Can I make mini Pumpkin Swirl Muffins?
Absolutely! Mini muffins will bake faster—reduce baking time to about 12 to 15 minutes and keep a close eye on them. These bite-sized treats are perfect for parties and snacking on the go.
Final Thoughts
These Pumpkin Swirl Muffins have quickly become one of my all-time favorite fall recipes because they perfectly capture that cozy, spiced feeling we all love this time of year. Moist, tender, and bursting with warm flavors surrounded by a luscious cream cheese swirl, they’re just too good to keep to yourself. I encourage you to try making these muffins soon—they’re a guaranteed crowd-pleaser and the perfect way to celebrate pumpkin season in style.
PrintPumpkin Swirl Muffins Recipe
These Pumpkin Swirl Muffins combine the warm spices of cinnamon, nutmeg, and cloves with moist pumpkin puree and a creamy, tangy cream cheese swirl for a perfect autumn treat. Perfect for breakfast or a snack, these muffins are rich in flavor and beautifully marbled with sweet cream cheese.
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 12 muffins 1x
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
For the Muffins:
- 1 3/4 cups (220 g) all-purpose flour
- 1 tsp baking soda
- 1 tsp ground cinnamon
- 1/2 tsp ground nutmeg
- 1/2 tsp ground cloves
- 1/2 tsp salt
- 1 cup (200 g) granulated sugar
- 1/2 cup (100 g) brown sugar, packed
- 1/2 cup (120 ml) vegetable oil
- 1 cup (240 g) canned pumpkin puree
- 2 large eggs
- 1 tsp vanilla extract
For the Cream Cheese Swirl:
- 6 oz (170 g) cream cheese, softened
- 1/4 cup (50 g) granulated sugar
- 1 large egg yolk
- 1/2 tsp vanilla extract
Instructions
- Preheat Your Oven: Preheat the oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or lightly grease the tin to prevent sticking.
- Mix the Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, baking soda, ground cinnamon, ground nutmeg, ground cloves, and salt. This blend of spices gives the muffins their characteristic warm flavor.
- Combine the Wet Ingredients: In a large bowl, whisk together the granulated sugar, brown sugar, and vegetable oil until thoroughly mixed. Then add the canned pumpkin puree, eggs, and vanilla extract. Mix until the batter is smooth and uniform.
- Combine Wet and Dry Ingredients: Gradually add the dry ingredient mixture into the wet ingredients. Stir gently until just combined, taking care not to overmix, as this can cause the muffins to become dense and tough.
- Prepare the Cream Cheese Swirl: In a separate small bowl, beat the softened cream cheese, granulated sugar, egg yolk, and vanilla extract together until smooth and creamy. This mixture will add a deliciously rich swirl to your muffins.
- Assemble the Muffins: Spoon the pumpkin batter into the prepared muffin tin, filling each cup about halfway. Then add a dollop of the cream cheese mixture on top of each muffin. Using a toothpick or skewer, gently swirl the cream cheese into the pumpkin batter to create a beautiful marbled pattern.
- Bake: Place the muffin tin in the preheated oven and bake for 18 to 22 minutes. The muffins are done when a toothpick inserted into the center comes out clean.
- Cool: Allow the muffins to cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely. This helps them set and makes them easier to remove from the pan.
Notes
- Do not overmix the batter to ensure light, fluffy muffins.
- Use canned pumpkin puree for best texture and flavor.
- Make sure cream cheese is softened to easily blend with sugar and egg yolk.
- Swirling gently is key to achieving a beautiful marbled effect.
- These muffins store well in an airtight container at room temperature for up to 3 days or can be frozen for up to 1 month.
Nutrition
- Serving Size: 1 muffin
- Calories: 320
- Sugar: 24 g
- Sodium: 210 mg
- Fat: 15 g
- Saturated Fat: 6 g
- Unsaturated Fat: 7 g
- Trans Fat: 0 g
- Carbohydrates: 40 g
- Fiber: 2 g
- Protein: 5 g
- Cholesterol: 70 mg
Keywords: pumpkin muffins, cream cheese swirl, fall baking, autumn recipe, spiced muffins, pumpkin puree

